Contents Page

• Science
  • Antibody Maturation
  • Unmutated Common Ancestor Identification
• Installation
  • ARMADiLLO
    • Using Singularity
    • From Source
  • UCA generation
    • Cloanalyst
    • Partis
• Using ARMADiLLO
  • Singularity Container
    • Note
  • ARMADiLLO
  • Example Commands
    • Container Pipeline
    • Note
    • ARMADiLLO
      • Within Container
      • Stand Alone
    • Cloanalyst (Container)
    • Partis (Container)
• ARMADiLLO Output
  • Print to Screen
  • Results Files
  • HTML Style Files
• Troubleshooting
  • Installation
    • Cannot find Boost Libraries
    • Container is not Recognized
  • Running
    • Using a user generated UCA
    • No output generated
    • Cannot find sequence file